Gcc -g -c -DBACKWARD_HAS_BFD -I src/htslib -I $(INCLUDE) -I $(EIGEN) -I $ for the C compiler but not the C++ compiler. G++ $(OBJECTS) $(OBJECTS_TEST) $(OBJECTS_LIB) -DBACKWARD_HAS_BFD -g -lpthread -lz -lhts -L $(HTSLIB) -o $(EXEC) $(EXEC): $(OBJECTS) $(OBJECTS_TEST) $(OBJECTS_LIB) SOURCES_LIB = $(wildcard src/htslib/cram/*.c) SOURCES = $(wildcard src/*.cpp src/tools/*.cpp src/analyzers/*.cpp src/RnaQuin/*.cpp src/VarQuin/*.cpp src/MetaQuin/*.cpp src/data/*.cpp src/parsers/*.cpp src/writers/*.cpp src/stats/*.cpp src/cufflinks/*.cpp) HTSLIB = /Users/tedwong/Sources/QA/htslib ![]() Thus, I'm making a new one.ĮIGEN = /usr/local/Cellar/eigen/3.2.8/include/eigen3 ![]() I had a Makefile but it doesn't meet the "industry-standard expectation".
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